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  • Sentieon Quick Start

Example Usage

  • Typical usage for Pangenome
  • Typical usage for DNAseq®
  • Typical usage for DNAscope
  • Typical usage for TNseq®
  • Typical usage for TNscope®
  • Typical usage for RNA variant calling
  • Examples of tool capabilities and applications

Advanced Usage

  • Sentieon-cli
  • Deduplication and UMI Handling
  • Somatic Variant Calling for SNPs and Indels
  • Sentieon Application Notes
    • Arguments Correspondence
    • Deployment Guide for Amazon Web Services
    • Deployment Guide for Azure
    • Germline Copy Number Variant Calling for Whole-Genome-Sequencing with CNVscope
    • Distributed Mode
    • Functional Equivalent Pipeline from CCDG using Sentieon®
    • Building and Installing gnuplot
    • Using jemalloc to Optimize Memory Allocation
    • License Server Extension
    • Description of output files and fields
    • Recommendations on Read Groups

User Manual

  • Introduction
  • DRIVER binary
  • BWA binary
  • minimap2 binary
  • STAR binary
  • UTIL binary
  • UMI binary
  • PLOT script
  • LICSRVR binary
  • LICCLNT binary

Appendix

  • Troubleshooting
  • Release notes and usage changes
  • Acknowledgements
  • Acronyms and Abbreviations
  • Disclaimer
Sentieon
  • Sentieon Application Notes

Sentieon Application Notes

  • Arguments Correspondence
  • Deployment Guide for Amazon Web Services
  • Deployment Guide for Azure
  • Germline Copy Number Variant Calling for Whole-Genome-Sequencing with CNVscope
  • Distributed Mode
  • Functional Equivalent Pipeline from CCDG using Sentieon®
  • Building and Installing gnuplot
  • Using jemalloc to Optimize Memory Allocation
  • License Server Extension
  • Description of output files and fields
  • Recommendations on Read Groups
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Sentieon v: 202503.02
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